Missions
Catalogue of Common Analyses
Training
Missions
Bioinformatics support for research teams:
- Conducting NGS data analyses
- Project guidance and collaboration
- Assistance with computing and data storage resources
Catalogue of Common Analyses
List of analyses that can be implemented quickly.
- Gene Expression
- Differential expression – RNA-seq
- Epigenomics
- DNA methylation (bisulfite sequencing)
- ATAC-Seq (Assay for Transposase-Accessible Chromatin with high-throughput sequencing)
- ChIP-seq (Chromatin Immunoprecipitation sequencing)
- De novo Assembly
- Transcriptome assembly
- Transcriptome clustering
- Gene prediction
- Gene prediction on a genome
- Gene Family Analysis
- Molecular Phylogeny
The catalogue of common analyses will be updated according to your needs and the evolution of the service.
For analyses not listed here, feel free to contact us: bsbii « @ » obs-banyuls.fr
Training
- Introduction to Linux, use of computing clusters, code management with Git and project management on GitLab, Python, bioinformatics analyses.
Service members
Involvement in publications
- Guichard, L. et al. The lamprey habenula provides an extreme example for the temporal regulation of asymmetric development. Front. Cell Dev. Biol. 13, 1528797 (2025).
- Lanoizelet, M. et al. Analysis of a shark reveals ancient, Wnt-dependent, habenular asymmetries in vertebrates. Nat Commun 15, 10194 (2024).
- Daric, V., Lanoizelet, M., Mayeur, H., Leblond, C. & Darras, S. Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis. Genome Biology and Evolution 16, evae038 (2024).
- Mayeur, H. et al. The sensory shark: high-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula reveal the molecular bases of sensory organ evolution in jawed vertebrates. (2024).
- Chowdhury, R. et al. Highly distinct genetic programs for peripheral nervous system formation in chordates. BMC Biol 20, 152 (2022).
- Brasó-Vives, M. et al. Parallel evolution of amphioxus and vertebrate small-scale gene duplications. Genome Biol 23, 243 (2022), .
- Bertrand, S. et al. The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX). Front. Cell Dev. Biol. 9, 668025 (2021).
- Mayeur, H. et al. When Bigger Is Better: 3D RNA Profiling of the Developing Head in the Catshark Scyliorhinus canicula. Front. Cell Dev. Biol. 9, 744982 (2021).
Contact us
bsbii "@" obs-banyuls.fr
LOCATION
Observatoire Océanologique de Banyuls-sur-Mer
Biologie Intégrative des organismes marins
1 avenue Pierre Fabre
66650 Banyuls-sur-Mer