Bioinformatics support for research projects of teams:
- Handling NGS data analysis.
- Project support.
- Assistance with the use of computational and storage resources.
- Development and maintenance of applications.
List of analyses that can be implemented quickly.
- Gene Expression
- Differential expression – RNA-seq
- Epigenomics
- DNA methylation (bisulfite sequencing)
- ATAC-Seq (Assay for Transposase-Accessible Chromatin with high-throughput sequencing)
- ChIP-seq (Chromatin Immunoprecipitation sequencing)
- De novo Assembly
- Transcriptome assembly
- Transcriptome clustering
- Gene prediction
- Gene prediction on a genome
- Gene Family Analysis
- Molecular Phylogeny
The catalogue of common analyses will be updated according to your needs and the evolution of the service.
For analyses not listed here, feel free to contact us: bsbii « @ » obs-banyuls.fr
- Introduction to Linux, use of computing clusters, code management with Git and project management on GitLab, Python, bioinformatics analyses.
Service members
Chowdhury, R., Roure, A., le Pétillon, Y. et al. – Highly distinct genetic programs for peripheral nervous system formation in chordates. BMC Biol 20, 152 (2022). doi.org/10.1186/s12915-022-01355-7
Brasó-Vives, M., Marlétaz, F., Echchiki, A. et al. Parallel evolution of amphioxus and vertebrate small-scale gene duplications. Genome Biol 23, 243 (2022). doi.org/10.1186/s13059-022-02808-6
Mayeur H, Lanoizelet M, Quillien A, Menuet A, Michel L, Martin KJ, Dejean S, Blader P, Mazan S and Lagadec R (2021) When Bigger Is Better: 3D RNA Profiling of the Developing Head in the Catshark Scyliorhinus canicula. Front. Cell Dev. Biol doi:/10.3389/fcell.2021.744982
Bertrand S, Carvalho JE, Dauga D, et al. The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX). Front Cell Dev Biol. 2021. doi:10.3389/fcell.2021.6680
Contact us
bsbii "@" obs-banyuls.fr
LOCATION
Observatoire Océanologique de Banyuls-sur-Mer
Biologie Intégrative des organismes marins
1 avenue Pierre Fabre
66650 Banyuls-sur-Mer