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Biologie Intégrative des Organismes Marins
UMR 7232

Publications des membres d'INTERMED


  • Petit-Cailleux C,  Davi H, Lefèvre F, Garrigue J, Magdalou JA, Hurson C, Magnanou E, Oddou-Muratorio S (2021) Comparing statistical and mechanistic models to identify the drivers of mortality within a rear-edge beech population, Peer Community Journal, 1: e55

  • Jessus C, Desdevises Y, Kloareg B & Toulmond A (2021) Henri de Lacaze-Duthiers (1821-1901), le père de la zoologie expérimentale et le fondateur des stations marines de Roscoff et Banyuls. Compte-Rendus de l’Académie des Sciences. In press.

  • Lami R, Gastineau S, Flom H & Desdevises Y (2021) Big steps, little change: a case study in French university teachers' cognitions in the context of pedagogical innovation. Frontiers in Education, section Higher Education. In press.

  • Pinto J, Lami L, Krasovec M, Grimaud R, Urios L, Lupette J, Escande ML, Sanchez F, Intertaglia L, Grimsley N, Piganeau G & Sanchez-Brosseau S (2021) Features of the Opportunistic Behaviour of the Marine Bacterium Marinobacter algicola in the Microalga Ostreococcus tauri Phycosphere. Microorganisms 9(8): 1777.

  • Ezzedine JA, Desdevises Y, Jacquet S (2021) Bdellovibrio and like organisms: current understanding and knowledge gaps of the smallest cellular hunters of the microbial world. Critical Reviews in Microbiology doi:10.1080/1040841X.2021.1979464

  • Oddou-Muratorio S, Petit-Cailleux C, Journé V, Lingrand M, Magdalou JA, Hurson C, Garrigue J, Davi H, Magnanou E (2021) Crown defoliation decreases reproduction and wood growth in a marginal European beech population. Annals of Botany: doi:10.1093/aob/mcab054


  • Nisembaum, LG, Martin P, Fuentes M, Besseau L, Magnanou E, McCormick S, Falcón J (2020) Effects of a temperature rise on melatonin and thyroid hormones during smoltification of Atlantic salmon, Salmo salar. Journal of Comparative Physiology B: 190: 731–748

  • Medlin LK. & Desdevises Y. 2020. Phylogenetic Reconstruction of the Diatoms Using Seven Genes, Multiple Outgroups and Morphological data for a Total Evidence Approach. Phycologia. Sous presse. 

  • Benovics M, Desdevises Y, Šanda R, Vukić J, Scheifler M, Doadrio I, Sousa-Santos C, Šimková A ( 2020) High diversity of fish ectoparasitic monogeneans (Dactylogyrus) in the Iberian Peninsula: a case of adaptive radiation? Parasitology, online first, January: 1-42

  • Ezzedine JA Jacas L, Desdevises Y, Jacquet S. 2020. Bdellovibrio and like organisms in Lake Geneva: An unseen elephant in the room. Frontiers in Microbiology. 11:98, doi: 10.3389/fmicb.2020.00098

  • Alric B, Cajo JF. Braak T, Lebredonchel H, Desdevises Y & Dray S (2020) A multivariate approach to investigate virus-microbe interactions from sequencing survey data. Molecular Ecology Resources. Sous presse.

  • Yau, Krasovec M, Benites LF, Rombauts S, Groussin M, Vancaester E, Aury JM, Derelle E, Desdevises Y, Escande ML, Grimsley N, Guy J, Moreau H, Sanchez-Brosseau S, van de Peer Y, Vandepoele K, Gourbière S & Piganeau G (2020) Virus-host coexistence in phytoplankton through the genomic lens. Sciences Advances. Vol. 6, no. 14, eaay2587

  • Ruiz-Rodríguez M, Scheifler M, Sanchez-Brosseau S, Magnanou E, West N, Suzuki M, Duperron S & Desdevises Y (2020) Host species and body site explain the variation in the microbiota associated to wild sympatric Mediterranean teleost fishes. Microbial Ecology doi: 10.1007/s00248-020-01484-y


  • Gallet A, Koubbi P, Léger N, Scheifler M, Ruiz-Rodriguez M, Suzuki M,  Desdevises Y & Duperron S (2019) Low-diversity bacterial microbiota in three genera of lanternfish (family Myctophidae) from the Southern Ocean. PLoS One. 14: e0226159-17.

  • Scheifler M, Ruiz-Rodriguez M, Sanchez-Brosseau S, Magnanou E, Suzuki M, West N, Duperron S & Desdevises Y (2019) Characterization of ecto- and endoparasites communities of wild Mediterranean teleost fish species by a metabarcoding approach. PLoS One. 14(9):e0221475

  • Benovics M, Desdevises Y, Vukić J, Šanda R & Šimková A (2019) Cophylogenetic relationships between Dactylogyrus (Monogenea) ectoparasites and endemic cyprinids of north-eastern peri-Mediterranean region. Journal of Zoological Systematics and Evolutionary Research. 58(1) : 1-21

  • Striberny A, Jørgensen EH, Klopp C, Magnanou E(2019) Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation. BMC Genomics 20: 529.

  • Friess N, Müller JC, Aramendi P, Bässler C, Brändle M, Bouget C, Brin A, Bussler H, Georgiev KB, Gil R, Gossner MM, Heilmann-Clausen J, Isacsson G, Krištín A, Lachat T, Larrieu L, Magnanou E, Maringer A, Mergner U, Mikoláš M, Opgenoorth L, Schmidl J, Svoboda M, Thorn S, Vandekerkhove K, Vrezec A, Wagner T, Winter MB, Zapponi L, Brandl R and Seibold S (2019) The species-rich arthropod communities in fungal fruitbodies are weakly structured by climate and biogeography across European beech forests. Diversity and Distribution: 25(5): 783-796

  • Krasovec M., Sanchez-Brosseau S, Piganeau G., 2019. First Estimation of the Spontaneous Mutation Rate in Diatoms. Genome Biology and Evolution, 11(7): 1829–1837


  • Benovics M, Desdevises Y, Vukić J, Šanda R, & Šimková A (2018) The phylogenetic relationships and species richness of host-specific Dactylogyrus parasites shaped by the biogeography of Balkan cyprinids. Scientific Reports 8: 13006.

  • Krasovec M, Vancaester E, Rombauts S, Bucchini F, Yau S, Hemon C, Lebredonchel H, Grimsley N, Moreau H, Sanchez-Brosseau S, Vandepoele K, Piganeau G (2018) Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage. Genome Biol Evol. 10(9): 2347–2365.

  • Medlin LK. & Desdevises Y (2018) Sequence Analysis Confirms a New Algal Class. Vie & Milieu 68(2-3): 151-155

  • Desdevises Y (2018) Introduction générale aux méthodes comparatives. In: Introduction aux méthodes comparatives phylogénétiques. Biosystema 31: 23-43

  • Krasovec M, Sanchez-Brosseau S., Grimsley N, Piganeau G (2018) Spontaneous mutation rate as a source of diversity for improving desirable traits in cultured microalgae. Algal Research, 35. DOI: 10.1016/j.algal.2018.08.003


  • Krasovec M., Eyre-Walker A, Sanchez-Ferandin S, Piganeau G (2017) Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes. Mol. Biol. Evol., 34(7): 1770-1779

  • Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G (2017) Population genomics of picophytoplankton unveils novel chromosome hypervariability.  Sci Adv., 3(7): e1700239

  • Doberva M, Stien D, Sorres J, Hue N, Sanchez-Ferandin S, Eparvier V, Ferandin Y, Lebaron P, Lami R (2017) Large diversity and original structures of acyl-homoserine lactones in strain MOLA 401, a marine Rhodobacteraceae bacterium. Frontiers in Microbiology, 8: 1152. IF: 4.16

Publications sur le thème des interactions durables par des membres du groupe avant 2017

Publications internationales avec comité de lecture (R = “Review”):

  • Rolland, J.-L., Stien D., Sanchez-Ferandin S., Lami R., 2016. Quorum Sensing and Quorum Quenching in the Phycosphere of Phytoplankton: a Case of Chemical Interactions in Ecology. Journal of Chemical Ecology, 42: 1201.
  • Lupette J, Lami R, Krasovec M, Grimsley N, Moreau H, Piganeau G, Sanchez-Ferandin S. 2016. Marinobacter dominates the bacterial community of the Ostreococcus tauri phycosphere in culture. Frontiers Microbiol 7: 1414.
  • Medlin LK, Desdevises Y. 2016. Phylogeny of “Araphid” diatoms inferred from SSU and LSU rDNA and PSBA sequences. Vie Milieu 66(2) : 129-154.
  • Bellec Laure & Yves Desdevises. 2015. Quand virus et hôtes évoluent ensemble : la fidélité est-elle la règle ? Virologie 19(3): 140-148. R
  • Doberva M., Sanchez-Ferandin S., Toulza E., Lebaron P., and Lami R., 2015. Diversity of quorum sensing autoinducer synthases in the Global Ocean Sampling metagenomic database. Aquatic Microbial Ecology, 74:107-119.
  • Sanchez-Ferandin S. 2015. Assessing Ecotoxicity in Marine Environment Using Luminescent Microalgae: Where Are We At? American Journal of Plant Sciences, 6: 2502-2509. R
  • Baudoux Anne-Claire, Hugo Lebredonchel, Hanna Dehmer, Marie Latimier, Roseline Edern, Florence Rigaut-Jalabert, Pei Gei, Laure Guillou, Elodie Foulon, Yann Bozec, Thierry Cariou, Yves Desdevises, Evelyne 
Derelle, Nigel Grimsley, Hervé Moreau & Nathalie Simon. 2015. Interplay between Micromonas species and their viruses in the Western English Channel. 
Environmental Microbiology Reports 7(5): 765-773.
  • Camille Clerissi, Yves Desdevises, Sarah Romac, Stéphane Audic, Colomban de Vargas, Silvia G Acinas, Raffaela Casotti, Julie Poulain, Patrick Wincker, Pascal Hingamp, Hiroyuki Ogata & Nigel Grimsley. 2015. Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes. Environmental Microbiology Reports 7(6): 979-989.
  • Sarabeev V, Desdevises Y. 2014. Phylogeny of the Atlantic and Pacific species of Ligophorus (Monogenea: Dactylogyridae): morphology vs. molecules. Parasitol Int 63(1) : 9-20.
  • Clerissi Camille, Nigel Grimsley, Hiroyuki Ogata, Pascal Hingamp, Julie Poulain & Yves Desdevises. 2014. Diversity of prasinoviruses (Phycodnaviridae) in marine samples unveiled using next generation sequencing analyses of PCR-amplified DNA polymerase and Major Capsid Protein genes. Applied and Environmental Microbiology 80(10): 3150-3160.
  • Bellec Laure, Camille Clerissi, Roseline Edern, Elodie Foulon, Nathalie Simon, Nigel Grimsley & Yves Desdevises. 2014. Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC Evolutionary Biology 14: 59.
  • Clerissi Camille, Nigel Grimsley, Lucie Subirana, Eric Maria, Louise Oriol, Hiroyuki Ogata, Hervé Moreau & Yves Desdevises. 2014. Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability. Virology 466-467: 146-157.
  • Doberva M., Sanchez-Ferandin S., Ferandin Y., Intertaglia L., Joux F., Lebaron P. and Lami R., 2014. Genome sequence of Maribius sp. Strain MOLA 401, a marine Roseobacter with a quorum sensing cell dependent physiology. Genome Announcements, 2(5): e00997-14.
  • Doberva M., Sanchez-Ferandin S., Ferandin Y., Intertaglia L., Croué J., Suzuki M., Lebaron P. and Lami R., 2014. Genome sequence of the sponge associated Ruegeria Strain MOLA R1/13b, a marine Roseobacter using a quorum-sensing based communication system. Genome Announcements, 2(5): e00998-14
  • Sanchez-Ferandin S., Leroy F., Bouget F-Y and Joux F., 2013. A New, Sensitive Marine Microalgal Recombinant Biosensor using Luminescence Monitoring for the Toxicity Testing of Antifouling Biocides. Applied Environmental Microbiology, 79:631-638.
  • Clerissi Camille, Nigel Grimsley & Yves Desdevises. 2013. Genetic exchanges of inteins between Prasinoviruses (Phycodnaviridae). Evolution 67(1): 18-33.
  • Hingamp Pascal, Nigel Grimsley, Silvia G. Acinas, Camille Clerissi, Lucie Subirana, Julie Poulain, Isabel Ferrera, Hugo Sarmento, Emilie Villar, Gipsi Lima-Mendez, Karoline Faust, Shinichi Sunagawa, Jean-Michel Claverie, Hervé Moreau, Yves Desdevises, Peer Bork, Jeroen Raes, Colomban de Vargas, Eric Karsenti, Stefanie Kandels-Lewis, Olivier Jaillon, Fabrice Not, Stéphane Pesant, Patrick Wincker & Hiroyuki Ogata. 2013. Exploring nucleocytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The ISME Journal 7: 1678-1695.
  • Deng Jun, Fang Yu, Hai-Bin Li, Marco Gebiola, Yves Desdevises, San-An Wu & Yan-Zhou Zhang
. 2013. Cophylogenetic relationships between Anicetus parasitoids (Hymenoptera: Encyrtidae) and their scale insect hosts (Hemiptera: Coccidae). BMC Evolutionary Biology 13:275.
  • Mladineo I, Šegvić-Bubić T, Stanić R, Desdevises Y. 2013. Morphological plasticity and phylogeny in a monogenean parasite transferring between wild and reared fish populations. PLoS ONE 8(4) : e62011.
  • Mendlová M, Desdevises Y, Civáňová K, Pariselle A, Šimková A. 2012. Monogeneans of West African Cichlid Fish: Evolution and Cophylogenetic Interactions. PLoS ONE 7(5) : e37268.
  • Clerissi Camille, Yves Desdevises & Nigel Grimsley. 2012. Prasinoviruses of the marine green alga Ostreococcus tauri are mainly species-specific. Journal of Virology 86(8): 4611-4619.
  • Grimsley Nigel H., Rozenn Thomas, Jessica U. Kegel, Stéphan Jacquet, Hervé Moreau & Yves Desdevises. 2012. Genomics of Algal Host-Virus Interactions. Advances in Botanical Research 64: 343-381. R
  • Decelle Johan, Ian Probert, Lucie Bittner, Yves Desdevises, Sébastien Colin, Colomban de Vargas, Martí Galí, Rafel Simó & Fabrice Not. 2012. An original mode of symbiosis in open ocean plankton. Proceedings of the National Academy of Sciences USA 109(44): 18000-18005.
  • Jacquet Stéphan & Yves Desdevises. 2012 EMBO conference series : viruses of Microbes (from exploration to applications in the -omics era). Belgique, Bruxelles, Académie Royale Militaire, 16 au 20 juillet 2012. Virologie 16(5). doi:10.1684/vir.2012.0463.
  • Poisot T, Verneau O, Desdevises Y. 2011. Morphological and molecular evolution are not linked in Lamellodiscus (Plathyhelminthes, Monogenea). PLoS ONE 6(10) : e26252.
  • Beltran S, Desdevises Y, Portela J, Boissier J. 2010. Mating system drives negative associations between morphological features in Schistosomatidae. BMC Evol Biol 10(1) : 245.
  • Montagné N, Desdevises Y, Soyez D, Toullec JY. 2010. Molecular evolution of the crustacean hyperglycemic hormone family in ecdysozoans. BMC Evol Biol 10(1) : 62.
  • Poisot T, Desdevises Y. 2010. Putative speciation events in Lamellodiscus (Monogenea: Diplectanidae) assessed by a morphometric approach. Biol J Linn Soc 99 : 559-569.
  • Kaci-Chaouch T, Verneau O, Desdevises Y. 2008. Host specificity is linked to intraspecific variability in the genus Lamellodiscus (Monogenea). Parasitology 135(5) : 607-616.
  • Desdevises Y. 2007. Cophylogeny: insights from fish-parasite systems. Parassitologia 49(3) : 125-127.
  • Desdevises Y. 2006. Determinants of parasite species richness on small taxonomical and geographical scales: Lamellodiscus monogeneans of northwestern Mediterranean sparid fish. J Helminthol 80(3) : 235-241.
  • Magnanou E, Fons, R, Feliu, C, Morand, S (2006) Physiological responses of insular wild black rat (Rattus rattus) to natural infection by the Digenean trematode Fasciola hepatica. Parasitology Research 99(1): 97-101
  • Magnanou E, Fons, R, Blondel, J, Morand, S (2005) Energy expenditure in Crocidurinae shrews (Insectivora): Is metabolism a key component of the “insular syndrome”? Comparative Biochemistry and Physiology Part A 142(3) : 276-285
  • Sasal P, Desdevises Y, Durieux E, Lenfant P, Romans P. 2004. Parasites in marine protected areas: success and specificity of monogeneans. J Fish Biol 64 : 370-379.
  • Desdevises Y, Legendre P, Azouzi L, Morand S. 2003. Quantifying phylogenetically structured environmental variation. Evolution 57(11) : 2647-2652.
  • Simkova A, Desdevises Y, Gelnar M, Morand S. 2001. Morphometric correlates of host specificity in Dactylogyrus species (Monogenea) parasites of European Cyprinid fish. Parasitology 123(2) : 169-177.
  • Simkova A, Desdevises Y, Gelnar M, Morand S. 2000. Co-existence of nine gill ectoparasites (Dactylogyrus: Monogenea) parasitising the roach (Rutilus rutilus L.): history and present ecology. Int J Parasitol 30(10) : 1077-1088.

Chapitres de livre :

  • Desdevises Yves & Emmanuelle Jousselin. 2016. La cospéciation, in the chapter “La spéciation” (Ravigné V, Barberousse A, Bierne, N, Britton-Davidian J, Capy P, Desdevises Y, Giraud T, Jousselin E, Moulia C, Smadja C, Samadi S), in Biologie Evolutive 2nd Edition (1st in 2010); by Frédéric Thomas, Thierry Lefèvre, Michel Raymond (eds). De Boeck.
  • Desdevises Yves, Serge Morand, Boris R. Krasnov & Julien Claude. 2015. Comparative analysis - recent developments and uses with parasites, in Parasite diversity and diversification: evolutionary ecology meets phylogenetics by Serge Morand, Boris Krasnov & Tim Littlewood (eds). Cambridge University Press.
  • Magnanou E, Morand S (2006) CH XVI: Macroparasites and micromammals interactions on islands p 295-315 in : Micromammals and macroparasites by Morand, S., Krasnov, B. & Poulin, R. Springer Verlag


Traductions :